ImmunodeficienciesApril 21, 20265 min read

Everything You Need to Know About Chronic granulomatous disease for Step 1

Deep dive: definition, pathophysiology, clinical presentation, diagnosis, treatment, HY associations for Chronic granulomatous disease. Include First Aid cross-references.

Chronic granulomatous disease (CGD) is one of those immunodeficiencies that shows up everywhere in Step questions because it’s mechanistically clean: one broken enzyme → one missing immune function → a predictable list of organisms and tests. If you can connect NADPH oxidase → respiratory burst → catalase-positive infections → abnormal DHR/NBT, you’ll unlock a ton of immunology vignettes.


Where CGD Fits (Big Picture)

CGD is a phagocyte dysfunction disorder (innate immunity) where neutrophils/macrophages can ingest microbes but can’t reliably kill certain ones due to impaired reactive oxygen species (ROS) generation.

First Aid cross-reference (typical placement): Immunology → Immunodeficiencies → Phagocyte dysfunction (CGD is classically listed alongside LAD and Chediak-Higashi).


Definition (What It Is)

Chronic granulomatous disease = inherited defect in NADPH oxidase (most commonly) leading to impaired respiratory burst in phagocytes.

  • Usually X-linked recessive (most common)
  • Can also be autosomal recessive variants

Core consequence: decreased formation of superoxide (O2O_2^-) → decreased downstream ROS (including H2O2H_2O_2-derived killing) → susceptibility to certain pathogens and granuloma formation.


Pathophysiology (How the Defect Causes the Symptoms)

Normal Respiratory Burst (What You’re Supposed to Do)

In neutrophils/macrophages, NADPH oxidase generates superoxide:

NADPH+2O2NADP++2O2+H+NADPH + 2O_2 \rightarrow NADP^+ + 2O_2^- + H^+

Then superoxide helps form other ROS, and myeloperoxidase (MPO) can use H2O2H_2O_2 to generate hypochlorite (bleach):

H2O2+ClMPOHOClH_2O_2 + Cl^- \xrightarrow{MPO} HOCl

CGD: The Key Failure

In CGD, NADPH oxidase is defective → you can’t generate superoxide efficiently → reduced respiratory burst → reduced intracellular killing.

Why “Catalase-Positive” Matters

Some bacteria/fungi produce catalase, which breaks down their own hydrogen peroxide:

2H2O2catalase2H2O+O22H_2O_2 \xrightarrow{catalase} 2H_2O + O_2

  • If an organism is catalase-negative, it tends to accumulate some H2O2H_2O_2, and the host can “steal” that H2O2H_2O_2 to help kill it (even if NADPH oxidase is weak).
  • If an organism is catalase-positive, it destroys its own H2O2H_2O_2, so the phagocyte has much less oxidant substrate to use → CGD patients are especially vulnerable.

Why Granulomas Form

Persistent infection + chronic macrophage activation → granulomatous inflammation. Granulomas can become large enough to cause obstruction (classically GI/GU).


High-Yield Organisms (Memorize These)

Classic Step list: Catalase-positive organisms
Think: “Cats Need PLACESS to Hide” (mnemonic varies, but the organisms are the point)

OrganismTypical CGD clue
Staphylococcus aureusSkin/lung abscesses, recurrent “cold” abscesses
Serratia marcescensPneumonia, osteomyelitis
Burkholderia cepaciaSevere pneumonia, particularly in patients with underlying lung disease
Nocardia (weakly acid-fast)Pneumonia, brain abscess risk
AspergillusPneumonia; Aspergillus is a classic, very testable cause of death in CGD

High-yield association: Aspergillus catalase-positive + CGD = recurrent/severe fungal pneumonia.


Clinical Presentation (How It Shows Up)

CGD usually presents in infancy/early childhood, but milder variants can present later.

Common Presentations

  • Recurrent infections with catalase-positive organisms
    • Pneumonia, lymphadenitis, osteomyelitis, skin infections
  • Abscess formation (especially S. aureus)
  • Granulomas causing obstructive symptoms
    • GI: vomiting, abdominal pain, obstruction
    • GU: urinary obstruction
  • Inflammatory complications (CGD can have significant inflammation even beyond infection)

“Vignette language” to recognize

  • “Recurrent infections with catalase-positive organisms”
  • “Pneumonia with Aspergillus”
  • “Deep-seated abscesses”
  • “Granulomas causing obstruction”
  • “Abnormal oxidative burst testing”

Diagnosis (The Tests You Must Know)

1) Dihydrorhodamine (DHR) Flow Cytometry — Best Test

  • Normal: neutrophils fluoresce (oxidative burst converts DHR → rhodamine)
  • CGD: decreased/absent fluorescence

X-linked carrier pattern (high yield): mosaic pattern with two populations of neutrophils (some normal, some abnormal).

2) Nitroblue Tetrazolium (NBT) Test — Older Classic

  • Normal: turns blue (positive test = normal oxidative burst)
  • CGD: fails to turn blue (remains colorless)

Differentiate from MPO Deficiency (Classic Trick)

Both affect oxidative pathways, but:

FeatureCGD (NADPH oxidase defect)MPO deficiency
Primary problemCan’t make superoxideCan’t make HOCl (bleach)
DHR testAbnormalAbnormal (but usually less severe clinically)
NBT testNegative (no blue)Normal (blue)
ClinicalSevere recurrent catalase+ infectionsOften asymptomatic; can get Candida infections

Step takeaway: If they emphasize recurrent severe infections + catalase-positive + granulomas, it’s CGD.


Treatment (Step-Relevant Management)

Infection Prevention

  • TMP-SMX prophylaxis (bacterial)
  • Itraconazole prophylaxis (fungal—especially Aspergillus coverage)
  • Interferon-γ can reduce severe infections (classically taught)

Treat Active Infections Aggressively

  • Culture-directed antibiotics/antifungals; low threshold for imaging (e.g., suspected abscess).

Curative Option

  • Hematopoietic stem cell transplant (HSCT) can be curative in appropriate candidates.

High-Yield Associations & “Buzz Phrases”

Must-know pairings

  • CGD ↔ catalase-positive organisms
  • CGD ↔ abnormal DHR / negative NBT
  • CGD ↔ granulomas + obstruction
  • CGD ↔ Aspergillus pneumonia

Genetics you should be ready to identify

  • Most common: X-linked recessive
    • More males affected
    • Carrier females may show mosaicism on DHR

First Aid–Style Rapid Review (Exam-Day Summary)

Chronic granulomatous disease

  • Defect: NADPH oxidase → ↓ respiratory burst
  • Inheritance: usually XLR
  • Tests: ↓ DHR fluorescence; NBT negative
  • Susceptible to: catalase-positive organisms (S. aureus, Serratia, Burkholderia cepacia, Nocardia, Aspergillus)
  • Clinical: recurrent infections + granulomas (can obstruct)
  • Tx: TMP-SMX + itraconazole prophylaxis, IFN-γ, consider HSCT

Practice-Style Mini-Vignettes (What They’re Really Testing)

  1. Boy with recurrent pneumonia and Serratia infections; neutrophils don’t fluoresce on DHR.
    → CGD due to NADPH oxidase defect.

  2. Patient with severe Aspergillus pneumonia; NBT test stays colorless.
    → CGD (Aspergillus is catalase-positive).

  3. Recurrent infections + granulomatous lesions causing urinary obstruction.
    → Think CGD granulomas.