Innate & Adaptive ImmunityApril 19, 20269 min readUpdated October 3, 2026

Complement Pathways: Classical vs Lectin vs Alternative

Complement gets easy when you sort the three triggers first: antibody, mannose, or microbe surface. Then the C3/C5 convertases and key clinical pearls stick fast.

All three complement pathways converge on C3. The classical pathway starts when C1q binds antigen-bound IgM or clustered IgG (or C-reactive protein); the lectin pathway starts when mannose-binding lectin (MBL) binds sugars on microbes and activates MASP proteases; the alternative pathway starts from spontaneous C3 "tickover," amplified on microbial surfaces by factor B, factor D and properdin. Each builds a C3 convertase (C4b2a for classical and lectin, C3bBb for alternative), then a C5 convertase, then the membrane attack complex (C5b-9). Deficiencies follow the map: early classical (C1, C2, C4) → lupus-like disease, C3 → recurrent pyogenic infections, C5-C9 → recurrent Neisseria, C1 inhibitor → hereditary angioedema, CD55/CD59 → PNH. C5-blocking drugs such as eculizumab recreate a terminal deficiency, hence their boxed warning for meningococcal infection.

The 5-second rule

Name the trigger, name the pathway: antibody = classical, sugar = lectin, bare microbial surface = alternative. Then every road runs C3 → C5 → C5b-9.

Trigger in the stemPathwayStarterProteaseC3 convertase
Antigen-bound IgM or clustered IgG; CRPClassicalC1 (C1q, C1r, C1s)C1s cleaves C4 and C2C4b2a
Mannose or other carbohydrate on microbesLectinMBLMASPs (MASP-2 is the effector enzyme) cleave C4 and C2C4b2a
Microbial surface, no antibody neededAlternativeSpontaneous C3 hydrolysis ("tickover")Factor D cleaves factor B to BbC3bBb, stabilized by properdin
  • Mnemonic for the classical pathway: "GM makes classic cars": IgG and IgM activate the classical pathway. Antigen-bound IgM engages C1 readily, whereas IgG must be aggregated (clustered).
  • Lectin = classical without antibody: MASPs do C1s's job, so both make the same convertases.
  • Alternative = always on, kept in check on host cells: C3b deposits constantly; regulators on our own cells remove it, while microbial surfaces (with properdin) let it amplify.

Convertases and the terminal pathway

Classical and lectinAlternative
C3 convertaseC4b2aC3bBb
C5 convertase (add a C3b)C4b2a3bC3bBb3b
ProductC5 → C5a + C5bSame
Terminal stepC5b + C6, C7, C8, C9 → MAC (C5b-9) poreSame

Naming trap: the large C2 fragment was originally called C2a, which is why many texts (including Merck) write the convertase C4b2a. Some texts rename every large fragment "b," so the same enzyme appears as C4b2b and C4b2b3b. Same molecule, different label.

What complement does

  • Opsonization: C3b coats microbes so phagocytes can eat them.
  • Anaphylatoxins: C3a, C4a and C5a degranulate mast cells.
  • Chemotaxis: C5a is the key neutrophil chemoattractant.
  • Lysis: C5b-9 (MAC) punches pores; it is essential for clearing Neisseria.
  • Immune complex clearance: early classical components help remove antigen-antibody complexes, which is why their loss causes lupus-like disease.

Regulators: what goes wrong when the brakes fail

RegulatorNormal jobWhen it's missing
C1 inhibitorInhibits C1 and the contact systemHereditary angioedema: bradykinin-mediated swelling
Factor H, factor I, MCP (CD46)Factor I cleaves C3b, with factor H, MCP or CR1 as cofactorsAtypical HUS; factor H or I deficiency mimics C3 deficiency
DAF (CD55)Displaces Bb and blocks convertases on host cellsWith CD59, PNH; inherited CD55 deficiency causes CHAPLE disease (a protein-losing enteropathy)
CD59Blocks C9 binding, so no MAC on host cellsPNH (complement lyses red cells)

Complement deficiencies in 5 seconds

DeficiencyResultClassic stem
C1q, C1r/s, C2, C4 (early classical)Lupus-like immune complex diseaseSLE features; 10-20% of people with C2 deficiency develop SLE
C3Recurrent pyogenic infections from birth, glomerulonephritisInfant with repeated pneumonia and sepsis
C5-C9 (terminal)Recurrent Neisseria meningitidisSecond meningococcal infection in an otherwise healthy person
Properdin (X-linked)Fulminant neisserial infectionBoy with meningococcemia
Factor H or ILike C3 deficiency; atypical HUSMicroangiopathic hemolysis, low platelets, AKI (see TTP vs HUS)
MBLRecurrent pyogenic infections with encapsulated bacteria from infancy; unexplained sepsisChild with frequent bacterial infections
C1 inhibitor (autosomal dominant)Hereditary angioedemaFace or lip swelling and abdominal attacks without hives, low C4
CD55 + CD59 (acquired PIGA mutation)PNHIntravascular hemolysis, thrombosis in odd sites, cytopenias; DAT-negative
  • HAE details: type 1 (85%) has low C1 inhibitor levels, type 2 normal levels with poor function; C4 is low even between attacks with normal C1q (C1q is low in acquired C1 inhibitor deficiency). Antihistamines, epinephrine and glucocorticoids usually don't work; attacks are treated with C1 inhibitor concentrate (plasma-derived or recombinant) or the bradykinin B2-receptor blocker icatibant, among other agents.
  • Vaccines: CDC recommends MenACWY and MenB vaccines for people with complement component deficiencies (e.g., C5-C9, properdin, factor H, factor D) and for people taking complement inhibitors.

See the full deficiency grid in complement deficiencies table and mnemonics, the organism in Neisseria meningitidis tips, and the autoimmune side in the SLE guide.

Complement-inhibitor drugs (selected US labels, October 2026)

Drug (brand)TargetMain US indications
Eculizumab (Soliris; biosimilars Bkemv, Epysqli)C5PNH; aHUS (not STEC-HUS); AChR-antibody-positive generalized myasthenia gravis; AQP4-antibody-positive NMOSD
Ravulizumab (Ultomiris)C5, long-acting (IV every 4-8 weeks)PNH; aHUS; AChR+ gMG; AQP4+ NMOSD
Crovalimab (PiaSky)C5PNH (age 13 and older, at least 40 kg)
Zilucoplan (Zilbrysq)C5 (subcutaneous)AChR+ gMG
Pozelimab (Veopoz)C5CHAPLE disease (CD55 deficiency)
Pegcetacoplan (Empaveli; Syfovre in the eye)C3/C3bPNH; C3 glomerulopathy or primary IC-MPGN (age 12 and older); geographic atrophy (Syfovre)
Iptacopan (Fabhalta, oral)Factor BPNH; IgA nephropathy; C3 glomerulopathy
Danicopan (Voydeya, oral)Factor DAdd-on to eculizumab or ravulizumab for extravascular hemolysis in PNH
Sutimlimab (Enjaymo)C1s (classical)Hemolysis in cold agglutinin disease
Narsoplimab (Yartemlea)MASP-2 (lectin)Transplant-associated thrombotic microangiopathy (age 2 and older), approved 2025
Avacopan (Tavneos, oral)C5a receptorAdjunct for severe active ANCA vasculitis (GPA, MPA). FDA's drug center proposed withdrawing approval in April 2026, citing unproven effectiveness and untrue statements in the application; per FDA (July 2026) it stays on the market until the company withdraws it or the Commissioner orders removal
  • The drug rule mirrors the deficiency rule. Eculizumab blocks C5 cleavage, so no C5a and no C5b-9: the boxed warning is serious meningococcal infection, with vaccination against serogroups A, C, W, Y and B at least 2 weeks before the first dose (unless delay is riskier) and a REMS program. Proximal blockers (pegcetacoplan, iptacopan, danicopan) carry boxed warnings for encapsulated bacteria. CDC warns that patients on complement inhibitors can get meningococcal disease even when fully vaccinated and on antibiotic prophylaxis.
  • Link to hemolysis: C5 and proximal inhibitors treat PNH (see the PNH cheat sheet); sutimlimab treats cold agglutinin disease (see autoimmune hemolytic anemia).

How USMLE tests it

  • Recurrent meningococcal disease with normal immunoglobulins and neutrophil function: terminal (C5-C9) or properdin deficiency.
  • Meningococcal sepsis in a patient with PNH or myasthenia gravis: suspect a C5 inhibitor.
  • Swelling without urticaria, abdominal attacks, no response to epinephrine, low C4: C1 inhibitor deficiency.
  • Lupus-like disease in a patient missing C1q, C2 or C4: impaired immune complex clearance.
  • Which fragment? C3b opsonizes, C5a recruits neutrophils, C3a/C4a/C5a degranulate mast cells, C5b-9 lyses.
  • Which convertase? C4b2a for classical and lectin, C3bBb for alternative; add C3b to make the C5 convertase.

Practice question

A 19-year-old man is admitted with meningococcemia. At age 14 he had meningococcal meningitis, and his older sister had meningococcal disease at 16. He has had no other serious infections, rashes, joint pains or swelling episodes. Immunoglobulin levels, lymphocyte counts and the neutrophil oxidative burst are normal. A deficiency of which of the following is most likely?

A. C1 inhibitor B. C2 C. C3 D. C8 E. Mannose-binding lectin F. CD55 and CD59 (GPI-anchored regulators)

Answer: D. C8 is part of the membrane attack complex (C5b-9). Without it the MAC cannot form, and the MAC is what clears Neisseria, so meningococcal infections recur, here in two siblings. Everything else about his immune system is normal, which is the classic setup. He should receive MenACWY and MenB vaccines (CDC).

  • A: C1 inhibitor deficiency causes hereditary angioedema: recurrent swelling without hives, abdominal attacks and a low C4, not infections.
  • B: early classical deficiencies such as C2 mainly cause lupus-like disease (10-20% of C2-deficient people develop SLE); he has no autoimmune features.
  • C: C3 deficiency causes recurrent pyogenic infections from birth plus glomerulonephritis, not a healthy childhood followed by isolated meningococcal disease.
  • E: MBL deficiency causes recurrent pyogenic infections with encapsulated bacteria from infancy, not isolated meningococcal disease in an otherwise healthy teenager.
  • F: loss of CD55 and CD59 (PNH) causes complement-mediated hemolysis, thrombosis and cytopenias, not recurrent Neisseria.

Key takeaways

  • Antibody → classical (C1q), sugar → lectin (MBL/MASP), surface → alternative (B, D, properdin). All converge on C3, then C5, then C5b-9.
  • Convertases: C4b2a (classical, lectin) and C3bBb (alternative); add C3b for the C5 convertase. C4b2b is the same enzyme under newer naming.
  • Fragments: C3b opsonin; C3a, C4a, C5a anaphylatoxins; C5a neutrophil chemotaxis; C5b-9 lysis.
  • Deficiencies: C1/C2/C4 → lupus-like; C3 → pyogenic infections and GN; C5-C9 or properdin → Neisseria; factor H/I → aHUS; C1 inhibitor → HAE (low C4); CD55/CD59 → PNH.
  • Drugs: C5 blockers (eculizumab, ravulizumab, crovalimab, zilucoplan, pozelimab), C3 (pegcetacoplan), factor B (iptacopan), factor D (danicopan), C1s (sutimlimab), MASP-2 (narsoplimab). Systemic C5, C3, factor B and factor D blockers carry boxed warnings for meningococcal or other encapsulated-bacterial infection, so patients are vaccinated first.

Sources

Visual explanations from the StepGenie QBank

Infographics StepGenie drew to explain questions in its own QBank, matched to this article's topic. Each caption is the takeaway of the question it explains.

Hypersensitivity responses — StepGenie USMLE Step 1 explanation infographic
Hypersensitivity responses

Hereditary angioedema from C1 esterase inhibitor deficiency → excessive bradykinin → recurrent, nonpruritic angioedema of face, tongue…

USMLE Step 1
Hemolytic disorders — StepGenie USMLE Step 1 explanation infographic
Hemolytic disorders

Paroxysmal nocturnal hemoglobinuria: acquired PIGA mutation → loss of GPI-anchored complement regulators (CD55/CD59) → intravascular…

USMLE Step 1
See more immunology explanation images

Frequently Asked Questions

What are the three complement pathways and what activates each?

The classical pathway is activated when C1q binds antigen-bound IgM or aggregated IgG, or bound C-reactive protein. The lectin pathway is activated when mannose-binding lectin binds carbohydrates on microbes and activates MASP proteases. The alternative pathway runs continuously through spontaneous breakdown of C3 and is amplified on microbial surfaces by factor B, factor D and properdin. All three converge on C3, then C5, then the membrane attack complex.

What are the C3 and C5 convertases of each complement pathway?

The classical and lectin pathways share a C3 convertase, C4b2a, and a C5 convertase, C4b2a3b. The alternative pathway uses C3bBb as its C3 convertase and C3bBb3b as its C5 convertase, and properdin stabilizes it. Some textbooks call every large complement fragment b, so the classical enzyme also appears as C4b2b and C4b2b3b; these are the same enzymes under a different naming convention.

Which complement deficiency causes recurrent Neisseria infections?

Deficiency of any terminal component, C5 through C9, prevents formation of the membrane attack complex, which the body needs to clear Neisseria, so patients get recurrent meningococcal infections. Properdin deficiency, which is X-linked, also predisposes to fulminant neisserial infection. CDC recommends MenACWY and MenB vaccines for people with these deficiencies and for people taking complement inhibitors such as eculizumab or ravulizumab.

What happens in C3 deficiency compared with early complement deficiency?

C3 sits where all three pathways meet, so its absence removes the main opsonin, C3b, and every downstream step: patients have recurrent pyogenic infections from birth and glomerulonephritis. Deficiencies of the early classical components C1, C2 and C4 mainly impair clearance of immune complexes and cause lupus-like disease; between 10 and 20 percent of people with C2 deficiency develop systemic lupus erythematosus.

How does C1 inhibitor deficiency cause angioedema?

C1 inhibitor normally restrains C1 and the contact system. When it is missing or dysfunctional, as in autosomal dominant hereditary angioedema, uncontrolled contact activation generates bradykinin, which causes swelling of the face, lips, airway or gut without hives or itching. C4 is low even between attacks. Antihistamines, epinephrine and glucocorticoids usually do not work; C1 inhibitor concentrate or icatibant, a bradykinin B2-receptor blocker, treats attacks.

Which drugs inhibit the complement system?

C5 inhibitors include eculizumab, ravulizumab, crovalimab, zilucoplan and pozelimab; pegcetacoplan blocks C3, iptacopan blocks factor B and danicopan blocks factor D. Sutimlimab blocks C1s of the classical pathway in cold agglutinin disease, and narsoplimab, approved in 2025, blocks MASP-2 of the lectin pathway. Because blocking C5 recreates a terminal complement deficiency, eculizumab carries a boxed warning for meningococcal infection and requires vaccination.

Try free Immunology questions

Reading about a topic is not the same as being tested on it. Answer a real Immunology question from the StepGenie qbank with no account, and see the full step-by-step explanation. Then build practice sets around the systems you score worst in, so the weak areas your qbank flags are the ones you actually drill.